Serialized Form


Package Jama

Class Jama.CholeskyDecomposition extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

L

double[][] L
Array for internal storage of decomposition.

internal array storage.

n

int n
Row and column dimension (square matrix).

matrix dimension.

isspd

boolean isspd
Symmetric and positive definite flag.

is symmetric and positive definite flag.

Class Jama.EigenvalueDecomposition extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

n

int n
Row and column dimension (square matrix).

matrix dimension.

issymmetric

boolean issymmetric
Symmetry flag.

internal symmetry flag.

d

double[] d
Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

e

double[] e
Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

V

double[][] V
Array for internal storage of eigenvectors.

internal storage of eigenvectors.

H

double[][] H
Array for internal storage of nonsymmetric Hessenberg form.

internal storage of nonsymmetric Hessenberg form.

ort

double[] ort
Working storage for nonsymmetric algorithm.

working storage for nonsymmetric algorithm.

Class Jama.LUDecomposition extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

LU

double[][] LU
Array for internal storage of decomposition.

internal array storage.

m

int m
Row and column dimensions, and pivot sign.

column dimension.

n

int n
Row and column dimensions, and pivot sign.

column dimension.

pivsign

int pivsign
Row and column dimensions, and pivot sign.

column dimension.

piv

int[] piv
Internal storage of pivot vector.

pivot vector.

Class Jama.Matrix extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

A

double[][] A
Array for internal storage of elements.

internal array storage.

m

int m
Row and column dimensions.

row dimension.

n

int n
Row and column dimensions.

row dimension.

Class Jama.QRDecomposition extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

QR

double[][] QR
Array for internal storage of decomposition.

internal array storage.

m

int m
Row and column dimensions.

column dimension.

n

int n
Row and column dimensions.

column dimension.

Rdiag

double[] Rdiag
Array for internal storage of diagonal of R.

diagonal of R.

Class Jama.SingularValueDecomposition extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

U

double[][] U
Arrays for internal storage of U and V.

internal storage of U.

V

double[][] V
Arrays for internal storage of U and V.

internal storage of U.

s

double[] s
Array for internal storage of singular values.

internal storage of singular values.

m

int m
Row and column dimensions.

row dimension.

n

int n
Row and column dimensions.

row dimension.

Package net.talvi.puffinplot

Class net.talvi.puffinplot.PuffinAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

specialMacMenuItem

boolean specialMacMenuItem

Class net.talvi.puffinplot.PuffinUserException extends java.lang.Exception implements Serializable

serialVersionUID: 1L


Package net.talvi.puffinplot.data.file

Class net.talvi.puffinplot.data.file.MalformedFileException extends java.lang.Exception implements Serializable

serialVersionUID: 1L


Package net.talvi.puffinplot.window

Class net.talvi.puffinplot.window.AboutBox extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

jButton1

javax.swing.JButton jButton1

jLabel1

javax.swing.JLabel jLabel1

jLabel3

javax.swing.JLabel jLabel3

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jTextArea1

javax.swing.JTextArea jTextArea1

Class net.talvi.puffinplot.window.CiteWindow extends javax.swing.JFrame implements Serializable

Class net.talvi.puffinplot.window.ControlPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

correctionField

javax.swing.JLabel correctionField

suiteBox

javax.swing.JComboBox suiteBox

rotationBox

net.talvi.puffinplot.window.ControlPanel.RotationBox rotationBox

vVsBox

net.talvi.puffinplot.window.ControlPanel.VVsBox vVsBox

toggleZplotAction

javax.swing.Action toggleZplotAction

trayButton

javax.swing.JRadioButton trayButton

emptyButton

javax.swing.JRadioButton emptyButton

updatingSuites

boolean updatingSuites

Class net.talvi.puffinplot.window.CorrectionWindow extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

cancelButton

javax.swing.JButton cancelButton

setButton

javax.swing.JButton setButton

checkBoxMap

java.util.Map<K,V> checkBoxMap

textFieldMap

java.util.Map<K,V> textFieldMap

Class net.talvi.puffinplot.window.CustomFieldEditor extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

contentPane

javax.swing.JPanel contentPane

list

javax.swing.JList list

listModel

javax.swing.DefaultListModel listModel

removeButton

javax.swing.JButton removeButton

addButton

javax.swing.JButton addButton

renameButton

javax.swing.JButton renameButton

upButton

javax.swing.JButton upButton

downButton

javax.swing.JButton downButton

fields

CustomFields<T> fields

Class net.talvi.puffinplot.window.GraphDisplay extends javax.swing.JPanel implements Serializable

serialVersionUID: -5730958004698337302L

Serialized Fields

plots

java.util.Map<K,V> plots
A map from internal plot names to the plots themselves.


zoomTransform

java.awt.geom.AffineTransform zoomTransform
A transformation applied to the graphics before painting them, intended to be used for zooming in and out of the display. It is initially set to the identity transformation.


mouseListener

net.talvi.puffinplot.window.GraphDisplay.GdMouseListener mouseListener

dragPlotMode

boolean dragPlotMode

draggingSelection

boolean draggingSelection

Class net.talvi.puffinplot.window.MainGraphDisplay extends GraphDisplay implements Serializable

serialVersionUID: 1L

Serialized Fields

samplesForPrinting

java.util.List<E> samplesForPrinting

printPageIndex

int printPageIndex

params

PlotParams params

Class net.talvi.puffinplot.window.MainMenuBar extends javax.swing.JMenuBar implements Serializable

serialVersionUID: 1L

Serialized Fields

recentFilesMenu

javax.swing.JMenu recentFilesMenu

anchorItem

javax.swing.JCheckBoxMenuItem anchorItem

app

PuffinApp app

Class net.talvi.puffinplot.window.MainWindow extends javax.swing.JFrame implements Serializable

serialVersionUID: -9075963924200708871L

Serialized Fields

graphDisplay

MainGraphDisplay graphDisplay

controlPanel

ControlPanel controlPanel

scrollPane

javax.swing.JScrollPane scrollPane

sampleChooser

SampleChooser sampleChooser

menuBar

MainMenuBar menuBar

welcomeMessage

javax.swing.JPanel welcomeMessage

sampleDataPanel

net.talvi.puffinplot.window.SampleDataPanel sampleDataPanel

splitPane

javax.swing.JSplitPane splitPane

splitPaneDividerWidth

int splitPaneDividerWidth

app

PuffinApp app

Class net.talvi.puffinplot.window.PrefsWindow extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

sensorLengthField

javax.swing.JTextField[] sensorLengthField

presetsBox

net.talvi.puffinplot.window.PrefsWindow.PresetsBox presetsBox

plotBoxes

java.util.List<E> plotBoxes

prefBoxes

java.util.List<E> prefBoxes

prefs

PuffinPrefs prefs

Class net.talvi.puffinplot.window.SampleChooser extends javax.swing.JPanel implements Serializable

serialVersionUID: 7533359714843605451L

Serialized Fields

depthSlider

net.talvi.puffinplot.window.DepthSlider depthSlider

sampleList

net.talvi.puffinplot.window.SampleChooser.SampleList sampleList

samplePane

javax.swing.JScrollPane samplePane

nextAction

javax.swing.Action nextAction

prevAction

javax.swing.Action prevAction

Class net.talvi.puffinplot.window.SiteMeanDisplay extends GraphDisplay implements Serializable

Class net.talvi.puffinplot.window.SiteMeanWindow extends javax.swing.JFrame implements Serializable

Serialized Fields

graphDisplay

SiteMeanDisplay graphDisplay

Class net.talvi.puffinplot.window.SuiteEqAreaDisplay extends GraphDisplay implements Serializable

serialVersionUID: 1L

Class net.talvi.puffinplot.window.SuiteEqAreaWindow extends javax.swing.JFrame implements Serializable

Serialized Fields

graphDisplay

SuiteEqAreaDisplay graphDisplay

Class net.talvi.puffinplot.window.TableWindow extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

table

javax.swing.JTable table

tableModel

net.talvi.puffinplot.window.TableWindow.DataTableModel tableModel

Class net.talvi.puffinplot.window.TabularImportWindow extends javax.swing.JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

fieldChoosers

java.util.List<E> fieldChoosers

headerLinesPanel

net.talvi.puffinplot.window.TabularImportWindow.HeaderLinesPanel headerLinesPanel

measTypeChooser

net.talvi.puffinplot.window.TabularImportWindow.EnumChooser<T extends java.lang.Enum<T>> measTypeChooser

treatTypeChooser

net.talvi.puffinplot.window.TabularImportWindow.EnumChooser<T extends java.lang.Enum<T>> treatTypeChooser

initialFormat

FileFormat initialFormat

separatorChooser

net.talvi.puffinplot.window.TabularImportWindow.StringChooser separatorChooser

columnWidthsBox

net.talvi.puffinplot.window.TabularImportWindow.LabelledTextField columnWidthsBox

fixedWidthBox

javax.swing.JCheckBox fixedWidthBox